NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103846_101292

Scaffold Ga0103846_101292


Overview

Basic Information
Taxon OID3300009324 Open in IMG/M
Scaffold IDGa0103846_101292 Open in IMG/M
Source Dataset NameMicrobial communities of water from the North Atlantic ocean - ACM48
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)886
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Pacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016277Metagenome / Metatranscriptome248Y
F093788Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0103846_1012924F016277AGGAGLTYYINRQEGRYDETCDEYDTRHEAYAMMREYQVSDHGRAYYYLSTTPKENWID*
Ga0103846_1012926F093788N/ALNLSITTMTEFNPRSYILTQLAYAEEQLMIADDMTSKLTWGNRCDALEAALADLEAA*

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