NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118673_1183790

Scaffold Ga0118673_1183790


Overview

Basic Information
Taxon OID3300009362 Open in IMG/M
Scaffold IDGa0118673_1183790 Open in IMG/M
Source Dataset NameSyntrophic microbial communities from biogas reactors - R1.C13.But.A IBDA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)523
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge → Syntrophic Microbial Communities From Biogas Reactors In Seattle, Wa

Source Dataset Sampling Location
Location NameSeattle, WA
CoordinatesLat. (o)47.652555Long. (o)-122.304991Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048060Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0118673_11837901F048060GAGVWAALFAAVLEWLTGLARSRTGTAGADAAAKPGLRERLDRRLAEWRSRQ*
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