NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114955_1077084

Scaffold Ga0114955_1077084


Overview

Basic Information
Taxon OID3300009410 Open in IMG/M
Scaffold IDGa0114955_1077084 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Porto, Portugal - Porto_5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)687
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NamePortugal: Porto
CoordinatesLat. (o)41.162Long. (o)-8.622Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027092Metagenome195N
F100272Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0114955_10770841F100272N/AMPAGTSAVTPAGAAPGGSAGGSGIPFTSPPPLADLVDEKVRRVPPGADTFLPRRHFDRTGLADQEHDPVTPLAMADLDTALSTFRESLLADVSRV
Ga0114955_10770842F027092N/AVGRSSPPPFDKTNCALDYDSPLGFAVILSSRWGKAGLWVDFWGTSFDGPS*

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