NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115029_1003994

Scaffold Ga0115029_1003994


Overview

Basic Information
Taxon OID3300009415 Open in IMG/M
Scaffold IDGa0115029_1003994 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7800
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013163Metagenome273Y
F088155Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0115029_10039941F088155GGAVTHMVPHMVHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVA
Ga0115029_10039949F013163GGAGLGLAQDKFSRATLVDNEGLHAFATRLRSLAELCGNIHSEGTMKQQLIQGLPEYFRTDVFVYNTVQRSYQQLSDYVAEKYRAAEDFMALANRGSPEGSSRKGQTLTGPRGLSVNHLGSSWEEDDTETHDMVAVLPSGTPGFRTGRAAPQPRREVTTGPPLCYRCWTRRNRVPDCKILTDKQRQLVKAARSTFLRKRNAGVVTTPDRTTVVALLWNAMFGGAEPAKTEGGGVPPVATPSKGRRGAENA*
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