Scaffold Ga0114982

Basic Information
Taxon OID	3300009419 Open in IMG/M
Scaffold ID	Ga0114982_1002157 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009419 Open in IMG/M

Scaffold ID

Ga0114982_1002157 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8814
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (74.07%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

8814

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (74.07%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002060	Metagenome / Metatranscriptome	597	Y
F006846	Metagenome / Metatranscriptome	363	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014017	Metagenome / Metatranscriptome	266	Y
F016396	Metagenome / Metatranscriptome	247	Y
F028166	Metagenome / Metatranscriptome	192	Y
F056611	Metagenome / Metatranscriptome	137	Y
F078716	Metagenome / Metatranscriptome	116	N
F088905	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100215710	F016396	GAGG	MRKSERLRLLEIHMVRLEMMVELYSQSLTNLLESQGLKAPTDLDAGKWYKAKLDQKDTE*
Ga0114982_100215716	F014017	AGG	MEKIQDYLDEKHRKKIADEIRYLELPPEWRPYEVIRYIVRIIEKQNG*
Ga0114982_100215718	F028166	AGGAG	MTNGNDLTGFNEVKGGDTNNLDLNPTGQAPAAAFPAEDKSTQDGSGLGQNGK*
Ga0114982_100215719	F088905	N/A	MSDNTKDIDTTPVVEVKEEVKAEPKAEAKSAPVADSTDYWANAWANRGV*
Ga0114982_10021572	F012975	GGAG	VLNLTLKGVEVFIERSKTKSQESYWENYDLLIWKQSAGGFTDVKGMFRKDQWGVTERIPVNENGIWKLPAKYVRHFR*
Ga0114982_100215720	F001280	GAGG	MCIECGCEALGSETGIIPVAITDVSRDGESGLTLNMTSTPEQTRQFINE*
Ga0114982_100215721	F078716	N/A	MSENGTGTPTAPISEPSGAVTSREVPKKYPRQGSRPGIKIDQNKHGIRRETSLDPKPQKKGRPKKV*
Ga0114982_100215725	F006846	AGGA	MIINLVEKYLMRPKRLREAIEAVVHDNDELLRIIKEYEENDTPTNLTWSEGDTWYGWTYNTKLKRYFFDDIGNTSLMGLWEDQWAREAESEKKDMFENQVDFE*
Ga0114982_10021574	F056611	AGG	MEFINKDKDHFKYGINQWTGEPNKPVFYNKEMALALRGIKKPVIDLQMDVVKYPEFLCLRLYEDNFVKYTGNTKEMVIDYLQKVRS*
Ga0114982_10021576	F000671	GGA	MEKILCYCCNKSKNKLAVKKSTLLPINLFLCETCISNKFEPRWVIILSGRQLGPEAVKDFIVKKRYIGTDIAASELFV*
Ga0114982_10021577	F002060	AGG	MQINYLSILIAISAALVSGMGTAIIASFRDSKKEERRRVERDQDLLKMDLKDLKIELYKIEKELSDWKDKYYNAIQELIEIKSELEATLIQLAHYDHDIDELDR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114982_1002157

Overview

Ecosystem & Geography

Associated Families

Sequences