NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114982_1003994

Scaffold Ga0114982_1003994


Overview

Basic Information
Taxon OID3300009419 Open in IMG/M
Scaffold IDGa0114982_1003994 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5915
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F008814Metagenome / Metatranscriptome327Y
F016396Metagenome / Metatranscriptome247Y
F077310Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0114982_100399411F000473AGGAMEFINKDKDHFKYGINEWTGEPNKPVFYTPEMAKRIREIKKPVMSLQMDIVKYPEFLAIRLYEDNFLQYEGIKKEIVIDYVGKVKKIIESYGVRCELEGVPSARILRSN*
Ga0114982_10039943F008814N/ALAEDKTTVLEGIIQDIGKELYQEWYNALAIEDRTEEASKVMLANANETAFWTIQEFMNRFNAAAEALRDN*
Ga0114982_10039945F016396GAGGMKKSERLRLLEMQVVRLEMLVELYTQSLTNLLESQGLQSPSHLDAGKWYKAKLDKLDNE*
Ga0114982_10039948F077310N/AMTLDSNSVIIVILAALLSGMGTAMINGIRESKKEKIRRTEREQDMLKMELKDLKIELYKLEKDLIEWRDKYYEAVQELIEVKGELENCLVELSHIVHHED*
Ga0114982_10039949F000671GAGGMEKILCYSCNKSKNKLSVRKSILIPINLLLCETCIAAKLEPRWVVILSGRQLGPEAVKEFIVKKRYLGTDIAASELFV*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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