NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0116128_1049379

Scaffold Ga0116128_1049379


Overview

Basic Information
Taxon OID3300009518 Open in IMG/M
Scaffold IDGa0116128_1049379 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1332
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050243Metagenome / Metatranscriptome145Y
F062620Metagenome / Metatranscriptome130Y
F085928Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0116128_10493792F062620GGAGGMAEEPKTELEKSLRALMLVNLEPLKQKQQITILDKAGCGQSEIAEVVGSTPKAVSVRLAEIRKEARKGKSK*
Ga0116128_10493793F050243AGGAGMDKDIQGQILATLQDLLIFQMAAKGVPQTQIREAVGLDMNRVGRIAKLAKKSAKSEE*
Ga0116128_10493795F085928AGGAGMPTEGTERLIELLEKALMIQLHAMGTTQGDIAKMLSKSKTDVNSFLKPIAKGKR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.