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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009590 Open in IMG/M |
| Scaffold ID | Ga0105159_1008749 Open in IMG/M |
| Source Dataset Name | Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_replicate |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2356 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California, Little Hot Creek | |||||||
| Coordinates | Lat. (o) | 37.6906 | Long. (o) | -118.8442 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013170 | Metagenome | 273 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105159_10087492 | F013170 | N/A | MSVHLHTTITRKANDILEELAKTYGTKSRVLEKALETLLRVDKVGSCDDCTIKAKVNEQTKLREALDLASISRRNLDSLLEIAMGNKTIEDFIKEQKAEAKNTIEILKSSISWKAPSNFKEFLIVLEEIRNLTNMYEIPSYSEIDNIAILRPKVFKRLPILVAFQVATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRRKEFGEFLEQQIEKELANVTPGLFKSTLTLVGPAFMSWAEKHLEEPITDLGNLLEDARIVLGLEEFPKEPKDFVKALLSAFVKMNWFKQAKVLIERDENILELVFQAVSAPITRMSVAALSIMLATRGWKTLNYSTEHTTVNMTIQYVGAEDQSLLDQLAELSLFQVIGKQFLDVIPVPRDLFNSFASKVYESDRRKFEEIYRATGTRISNAIRMLARNDPEKIRRLAKNFILKNIDATQPDAEVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEITTTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPEDYPWTIREVGERIIDMYRELGIEVEIEYFEGGFTLKYKSCPY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |