NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116216_10445085

Scaffold Ga0116216_10445085


Overview

Basic Information
Taxon OID3300009698 Open in IMG/M
Scaffold IDGa0116216_10445085 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)785
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014877Metagenome / Metatranscriptome259Y
F072302Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0116216_104450851F014877N/ATGTAKAGTAGQRRAVFAVDQDAALAALEDTWAVGGCHAFSADHGTWPAIGGAGEVLTGATLDELDRKIRAHWQETQ*
Ga0116216_104450852F072302N/AVSLVADGEDQAARLKQFRATHPHVPVLLLGACPKAWVGDQKIENRTLRGLLDDLEEIVRQDAHTSRAGTPQ*

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