NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116195_1001551

Scaffold Ga0116195_1001551


Overview

Basic Information
Taxon OID3300009707 Open in IMG/M
Scaffold IDGa0116195_1001551 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13547
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameChina: Chengdu, Sichuan
CoordinatesLat. (o)30.66Long. (o)104.06Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088355Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0116195_100155110F088355AGGAGMKNLTNKANLFVGDKGQLVLAILTIALFVLAAGAPNATLGIGR*
Ga0116195_100155112F088355AGGAGMKNTINNIRLFASHKGQLVLAILTIALFVLAAGAPNATLGIGR*
Ga0116195_100155113F088355AGGAGMKSIINKINLFASHKGQLILAILTIALFVLAAGAPNATLGIGR*
Ga0116195_100155114F088355AGGAGMKNTISLFVGRKGQLILAILTIALFVLAAGAPNATLGIGR*
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