Scaffold Ga0123373_186236

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0123373_186236

Scaffold Ga0123373_186236

Overview

Basic Information
Taxon OID	3300009732 Open in IMG/M
Scaffold ID	Ga0123373_186236 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_232_2m (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	670
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Louisana Shelf, Hypoxic Zone, Gulf of Mexico
Coordinates	Lat. (^o)	28.8679	Long. (^o)	-90.4764	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000953	Metagenome / Metatranscriptome	822	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123373_1862361	F000953	N/A	MKFAIAALIGLASASQKIKELDPSPAYYTPFDHEATYYERVTTPRFAEDSDDIFMRSMIEQYALEERNKEYEDTATGLKTGGEPNGKFWMNHASTLAAAREVLGTHKGLSGKMLDDYINTYFEKAWGHFDVNQTGFVEVIKMPQLMRFLCSDQYMQLGESG*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.