Scaffold Ga0131972_10103

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0131972_10103

Scaffold Ga0131972_10103

Overview

Basic Information
Taxon OID	3300009842 Open in IMG/M
Scaffold ID	Ga0131972_10103 Open in IMG/M
Source Dataset Name	Bacterial communities in Amundsen Sea Polynya. Combined Assembly of Gp0149108, Gp0149160, Gp0151052
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Macrogen Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18072
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Metagenomic Analysis Of Heterotrophic Bacteria Associated With Phytoplankton Bloom In Amundsen Sea Polynya

Source Dataset Sampling Location
Location Name	Polynya in Amundsen Sea
Coordinates	Lat. (^o)	-73.3	Long. (^o)	-113.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022753	Metagenome / Metatranscriptome	213	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0131972_101031	F022753	N/A	LKIVCKKKVSNIDWCEAAIKNFFPLIIFSLPLMIILVDKNIFKHKDVQKPIIFPPNKTIFFGSKIAGKKIREIKIIPEKKNNENKKFLIILIKN*

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