NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0131972_12480

Scaffold Ga0131972_12480


Overview

Basic Information
Taxon OID3300009842 Open in IMG/M
Scaffold IDGa0131972_12480 Open in IMG/M
Source Dataset NameBacterial communities in Amundsen Sea Polynya. Combined Assembly of Gp0149108, Gp0149160, Gp0151052
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMacrogen Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9091
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Metagenomic Analysis Of Heterotrophic Bacteria Associated With Phytoplankton Bloom In Amundsen Sea Polynya

Source Dataset Sampling Location
Location NamePolynya in Amundsen Sea
CoordinatesLat. (o)-73.3Long. (o)-113.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094415Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0131972_124805F094415N/ALGGNIGLFKDKNMIYTKNEMLNDLNASFTKGKIYSHSELRSFLESNKLFSVKNVAAYTYNRWNRGMIDIFPVLEWINRGTYKFLGTDFEYNGIIIHHPQGGIPYKIGHWENGKLFFFGRFDSFADWCNSTDDGIKVADLNSKIVFESSDGKITQKKILTDSRDDDVTFEKGYSLTLFDSTLGKLLRFKTEGDTFDFGNFSYIIKQIN*
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Institute for Fundamental Biomedical Research
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