NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132188_103054

Scaffold Ga0132188_103054


Overview

Basic Information
Taxon OID3300009862 Open in IMG/M
Scaffold IDGa0132188_103054 Open in IMG/M
Source Dataset NameAquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, 3m depth; RNA IDBA-UD
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)635
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location
Location NameFalmouth, Massachusetts
CoordinatesLat. (o)41.548517Long. (o)-70.622961Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003518Metatranscriptome481Y

Sequences

Protein IDFamilyRBSSequence
Ga0132188_1030541F003518N/AATLIEEIKDAEKRIKEATAESDKALKEYEVNDADLKAALYALTEAIKVLKTSQSPSMAQLQTIGKTVKQAALIADVLGIGGKDVEKAAAFFLQQGDGDVPVEMEDYKFHSTGIINTLEKLLDSFRAEEENLDADEKRRVQEFTMFMQDRTDFIKAQTLSLKEAKASKEQKIEDIATASQELTTTNADLLSDMEYLDELNTVCHDKAKTWDQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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