NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105128_118700

Scaffold Ga0105128_118700


Overview

Basic Information
Taxon OID3300009976 Open in IMG/M
Scaffold IDGa0105128_118700 Open in IMG/M
Source Dataset NameSwitchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)532
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Source Dataset Sampling Location
Location NameAustin, Texas
CoordinatesLat. (o)30.387Long. (o)-97.7301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037084Metagenome168Y
F037521Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0105128_1187001F037521N/AMARTLALIALVHPVLHRVSCSYEMIPNAPKHYETHQNMSLGSNGVDWVRSL
Ga0105128_1187002F037084N/ARCEKSRRDFVARTFALIAPVHPVLYRVSCSYETFPNAPKHYETHQNMSLGSNGVDWVHSLRKIQCDFVARTFVLIEPAQYVLKQVLCSYGTIPIAPKYYETHRNISLVSNGVDWVRSLRKILK*

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