NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126380_10748347

Scaffold Ga0126380_10748347


Overview

Basic Information
Taxon OID3300010043 Open in IMG/M
Scaffold IDGa0126380_10748347 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)792
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001070Metagenome / Metatranscriptome787Y
F004510Metagenome / Metatranscriptome435Y
F012740Metagenome / Metatranscriptome277Y
F076826Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0126380_107483471F012740N/ATRTIMRRIANDYDRLAKVAEEQLADKERGAIGDKT*
Ga0126380_107483472F004510GGAGGMITWAPIGSAVIALVPVVLVQGKWTTSQDSWFAAVFTSAIMAMVIDHFVNYINQ*
Ga0126380_107483473F001070AGGMEAGQMNSFDKMLGWFPHNATEWIEFIIVALLLWLLMVVAISELELTSVS*
Ga0126380_107483474F076826N/AMEVDMWGAENEEPEMSFRHGYQQGAIEVFCAIEQFLDPATREVLQAWIEKDVSMWRAKAMLG
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