NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126311_10001396

Scaffold Ga0126311_10001396


Overview

Basic Information
Taxon OID3300010045 Open in IMG/M
Scaffold IDGa0126311_10001396 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11725
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8712Long. (o)-122.4276Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020517Metagenome223Y
F079676Metagenome / Metatranscriptome115Y
F081092Metagenome / Metatranscriptome114Y
F091480Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0126311_1000139611F079676GAGMLGETADHGASIKAGDRVRALDGAYKGRVGTALRVVTSRDEGRTSHSILVSFPAGGADYLDAAALEKAETPDEA*
Ga0126311_100013966F091480GAGVGSNGRGHDVTFYSQRADGPYYRWVYAEGLGRWRYSRVSLDRLELNVLCVARWDAVPPALRDRLGEHYLE*
Ga0126311_100013967F020517GGAVSRDAKHYLVKRPNEILSKRRSWNEVQAELREKGTDADEAMLFRGVVTEDGTEYRDMYADSRTQVTEHAA*
Ga0126311_100013969F081092AGGCGGVNGYDDFIERLEAALTDDEGREDFLEYLEGLTSEGRAEILAEADRLEAEAKVD*
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