NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126382_10829749

Scaffold Ga0126382_10829749


Overview

Basic Information
Taxon OID3300010047 Open in IMG/M
Scaffold IDGa0126382_10829749 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)792
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002604Metagenome / Metatranscriptome544Y
F024600Metagenome205Y
F076826Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0126382_108297491F076826N/AMEVYMRGAENDEPEMSFRRGYQQGAIDTFLAIERCLDPTTREVLQAWIEKDVSMWRAKAMLGHP
Ga0126382_108297492F002604AGTAGMLGKLSIIGAVAAILMIPTALSAQVGGAVNAGAAVRGAVERGIPGPDFGTWRSPSREIHRSRKHNMATKQRR*
Ga0126382_108297493F024600N/ALSGYYNAKRNNRIVDLQALEENMNKVQNYCYDEKNFKVPVMKAVEQVLGK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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