NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0126373_10000075

Scaffold Ga0126373_10000075


Overview

Basic Information
Taxon OID3300010048 Open in IMG/M
Scaffold IDGa0126373_10000075 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)84264
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (57.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000299Metagenome / Metatranscriptome1341Y
F000883Metagenome / Metatranscriptome849Y
F105584Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0126373_1000007530F000299AGGMVKLNSDLKTSNVSGGSMENVERSGSSLRPIDRYDVGHVQEVIRQAHEELRQLMQQRAEIMKRIGTVKQTISGLANLFGDGVLNDELMELVDRKSNGRQPGFTKACRMILMESGRAMNSRDICDYFQEKLPDLLARHKDPMASVTTVLNRLVEYGEAEAVVSNGRRAWRWVADVPASSSTDKIV*
Ga0126373_100000754F105584GAGMLRYRTGEEIRKADRVLFHGRPGEIELVVADRTGDPAIDWYVENEGAGVMVLEPRVFGRAYVQHTEEAEDLVFVSRAVTD*
Ga0126373_1000007571F000883GGAGMSGQVVLYFEDQSDALRFALAAGQVMAGDGGKYTSDLLQETARVTRIRLDAVNAGHLKKSGPDRAA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.