NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124929_144006

Scaffold Ga0124929_144006


Overview

Basic Information
Taxon OID3300010169 Open in IMG/M
Scaffold IDGa0124929_144006 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_B MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)862
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032666Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0124929_1440061F032666N/ASLCCEENEHTIFMQRSRCSVGSVRPELGNQPQKGGCVMKRVLTLIAATALTASAVMAQTIVRISAYNPFVSTIVGHPELGPVDLSGAGPYPALQSGVLPGNQVGIYTLFLSVHPDQNWLTGGPNDSTRWSSLSFSITYDSNYIDFVFRARDGSDVFVSSLPVNSVFSPYIQENPPARGVAAGRLEARNGSNVTVTFALAATANVNGVRSSSGFNGYLRDWFRDLYPEPSSGEELPLRVRVNGPAIAGLPNQTYSVSPGIPEGNIIIQVNPADSSRNVIVDGRFIVPE
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