NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136160_1111341

Scaffold Ga0136160_1111341


Overview

Basic Information
Taxon OID3300010225 Open in IMG/M
Scaffold IDGa0136160_1111341 Open in IMG/M
Source Dataset NameSitobion avenae (English Grain Aphid) hemolymph microbial communities from Shanxi Taiyuan, China - Region1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDNAVision
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3265
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Endosymbionts → Bacteria → Unclassified → Unclassified → Wheat → Sitobion Avenae (English Grain Aphid) Hemolymph Microbial Communities From Shanxi Taiyuan, China - Region1

Source Dataset Sampling Location
Location NameShanxi Taiyuan, China
CoordinatesLat. (o)37.87Long. (o)112.54Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029983Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0136160_11113411F029983N/AVGKLVSLCYIIGYKWVTVMDGVKFEFNDIILSLYKKN
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Institute for Fundamental Biomedical Research
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