NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136219_1011281

Scaffold Ga0136219_1011281


Overview

Basic Information
Taxon OID3300010227 Open in IMG/M
Scaffold IDGa0136219_1011281 Open in IMG/M
Source Dataset NameSoil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterFidelity Systems Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)888
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil → Soil Microbial Communities From Bangor Area, North Wales, Uk Enriched With Cashew Seed Oil

Source Dataset Sampling Location
Location NameBangor area, North Wales, UK
CoordinatesLat. (o)53.24Long. (o)-4.01Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047855Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0136219_10112811F047855N/AAPGSALDSVNFYAEKAELFASRGNYVRARTLADSAWRLEKRMADDPNQSLYVRRGQYEVLAWLAALLGDRTVALSMLVKAGQSPTIARYPRGVEAVQLSCTTAAVYGFLGDAESMMPFARKCFTSANGYAIAYLNDPEFAWRKNDPRIQEIVAXXXXXXXX

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