Scaffold Ga0136219_1027882

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136219_1027882

Scaffold Ga0136219_1027882

Overview

Basic Information
Taxon OID	3300010227 Open in IMG/M
Scaffold ID	Ga0136219_1027882 Open in IMG/M
Source Dataset Name	Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Fidelity Systems Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	565
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil → Soil Microbial Communities From Bangor Area, North Wales, Uk Enriched With Cashew Seed Oil

Source Dataset Sampling Location
Location Name	Bangor area, North Wales, UK
Coordinates	Lat. (^o)	53.24	Long. (^o)	-4.01	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004033	Metagenome / Metatranscriptome	456	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136219_10278821	F004033	AGAAGG	MKKTVLGVLLLLCATVGFAADRPATPELNVPVNGDDWLKLSSSEKLFWSIGYAAGYQDALGKIDVTSGPGTPCATLAVKTERQSSSAGKVTGFELVSGLERFYSVPANTPIPLGSAIRIYLLQQSGKDETTIQELIDTARVLGAQSRR

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