NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129307_1000677

Scaffold Ga0129307_1000677


Overview

Basic Information
Taxon OID3300010282 Open in IMG/M
Scaffold IDGa0129307_1000677 Open in IMG/M
Source Dataset NameCapybara group fecal microbial communities from Wisconsin, USA - P1105 metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48492
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Capybara Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.07Long. (o)-89.4Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082888Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0129307_100067734F082888AGAAGMEEDNMSQIIEINVENQEYQIEWALSEYFDELKGMKFMLNSVAADQIVMINNLSETAKILLSAVAGAVIQYLIDNNCPIDSIFESGYFIIRK*

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