NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136644_10000539

Scaffold Ga0136644_10000539


Overview

Basic Information
Taxon OID3300010334 Open in IMG/M
Scaffold IDGa0136644_10000539 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30213
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (73.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070923Metagenome122Y
F078637Metagenome116Y
F090310Metagenome108Y
F098561Metagenome103Y
F102439Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0136644_1000053918F098561AGGAMAITLGKDCRISIGGNVSGARNVTLTETARTIDINPFGSREASVYQTGYDCSVSVELNDSEALGDAFSNMHTGTPVQVSGGAGGFNFLAVITGISENDPIDGVATFTIDAKMTDRSLTRGGA*
Ga0136644_100005392F102439N/AMSEVQRSFVDDDLPPAKGKRRRMPERLSPPMRKFLTKLARIGARVTWTIELIYDPSKGGQGELTDRAKAGDHTLVLDTVREVEYRASQLGDDIEAFMTPPDKLPAEPGHPSRVDAMARRQAARQHLFD*
Ga0136644_1000053922F090310AGGAMSNTLRTIADRLATGLNSVTWAIPSTVVQRRNWTDLDVESMTSPRVFVVPGNADVTRISRQMMQIDYTVTVFVGRHVQTDSDVDAMLDLADSVMLQVRAHSFGQAVVWPAGVTSPQTVSIDLNPDDALTERNVWRAVITATYRVFESNVLPTA*
Ga0136644_100005393F070923GGCGGVTVGDAPGGMLPHLRSRLRQEIGPRAVNAGRAFDEFVDAICRCWNAEHWTKLARTQPESQSAAIQDAKVLIAKVREDVEAMWGDSEQLRSLYSSVGEHTVAVFARLWFESMSNRTWMRQACREARRT*
Ga0136644_1000053934F078637N/AMKTEWITVEFLGGPLDGALRPVQVGVAIYYLANGAVIHAYAADEIHEGNSVRPVMSHNEVLNVSNWNA*

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