NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129333_10018470

Scaffold Ga0129333_10018470


Overview

Basic Information
Taxon OID3300010354 Open in IMG/M
Scaffold IDGa0129333_10018470 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6630
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F003582Metagenome / Metatranscriptome478Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y
F017101Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0129333_1001847011F000671GAGGMEKILCYSCNKTKNKLDVKKSTLLPINLLMCETCITSRFEPRWVIILAGRSNGAEFVKEYIQKKRYVGNEVSASELLV*
Ga0129333_1001847012F011938AGGGGGVKEYYNVIYIVYIHSENCYGTVEKLGAYASVVRYNLHGNELEELLENEDFTIVDEIVHQHVEESN*
Ga0129333_1001847013F000473GAGGMFLNKKDPSEYFKYGINQWTGEPNKPVFYTEEMKKRVHAIPKPALLLIDVVKYPDFLALRLYEDNFIQFDGTKKEIVIDYVSKVKKLIESYGVRCELEGVPSERVL*
Ga0129333_1001847015F013878AGGMLNLTELGVEVFMKKAKNIVPYWDNYDLIIWKKDINGFTNIKGMYRQDAWGTAERFSVTKQGIWKIPTKYVKHFK*
Ga0129333_1001847017F003582AGTAGMKTYRVKLEVDAEVQAFSEDDAVDYMNDIFGVDDEVKSVKVVSVREK*
Ga0129333_100184705F017101GGAGGMDESKMTVLESIIRDVAQALFQKWSDALPEDQKTDLNVNNLSKNSLDTTYFVVKLFMDKFNEAAEVLKPIDDPENI*
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