NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126370_10472450

Scaffold Ga0126370_10472450


Overview

Basic Information
Taxon OID3300010358 Open in IMG/M
Scaffold IDGa0126370_10472450 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1052
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009891Metagenome / Metatranscriptome311Y
F048880Metagenome / Metatranscriptome147Y
F099398Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0126370_104724501F099398N/AMMQRILNSKNLVAFVLAAATGMTLYFRIPFPESNI
Ga0126370_104724502F009891AGGAGGMSIINKPPQHVKREYELEEPVALVVEKYATFIDSTPDHVVNSALKMLLWKDKHFMIWRKQQQQAARKEVPITGTQKSQASA*
Ga0126370_104724503F048880N/ASHLAAYQGLFRQLKSFRFLYIAAKQAYFQKAEDRFRAMVKRPLESDVSSEILRYFQIRKKWDNHEYVIPVTADLEFLNEARRRFHGDRFETLYRAWSFGELSEGDLRAEFSQLRPDRAVFFDTFLVNPHGSPLAVASGNGDGCVKYTNHLRRHGSRHLEGDAKLLGA*
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