NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126372_10002828

Scaffold Ga0126372_10002828


Overview

Basic Information
Taxon OID3300010360 Open in IMG/M
Scaffold IDGa0126372_10002828 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7740
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011441Metagenome / Metatranscriptome291Y
F053003Metagenome141Y
F071916Metagenome121Y
F088377Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0126372_100028281F088377N/ALKIEGSRVVAQPSAQGQRNSKLYHVKVEIDASVAGQTSTYVFNCVRDGQLTIVQPIGMR*
Ga0126372_100028282F011441GGAMGLDTGTVFKRSILCPHCNEDYLFTLRAIADSPELKCHGCGGSIRLGDSVYKPLLSEVRNTLEAVDTAQLTPTFVSVHSSSPSNSLP*
Ga0126372_100028283F071916GGCGGMGADMKSHFRAGAKVCSMAIMVLLVIGALGPPNWTPRTALGWQIDHFVGYFAITLLVCFAWPRPFLVGGLLIAAAFLLEGLQAFTPDRTANLVAALCGAGGAVAAALLAELFSRAWRWHLKSAREAKSRF*
Ga0126372_100028284F053003GGAMALDAGTALKRPVLSAPSDEDYYFTLPAITASPKLKHRLRAGAKAFCVPIVVLLVVAALGPEKWAPRTHLGWQFDHFIGYFGITLFVCFAWPRPFMVGGVFAAVAALLEVLQAFTPDRSAYLPAIFYGAAGALAATLFVEFVIRVWRWRLKVNVRQARSKSLAFTGSPNPA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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