NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126378_11230344

Scaffold Ga0126378_11230344


Overview

Basic Information
Taxon OID3300010361 Open in IMG/M
Scaffold IDGa0126378_11230344 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)846
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005829Metagenome / Metatranscriptome389Y
F089663Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0126378_112303441F005829N/AMKTTSDRRATAELLAALVEVAIAHRRRHYSQSGEPLATTLAVLECLQRESFVTVEDPARRRSAPAPAAWIP*
Ga0126378_112303442F089663N/AMALDPAVLKARIDLRIYQLKALAAWTVANCRGRVEREQLLRGLPPLPARRNEDDE*

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