NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126379_11263308

Scaffold Ga0126379_11263308


Overview

Basic Information
Taxon OID3300010366 Open in IMG/M
Scaffold IDGa0126379_11263308 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)845
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007009Metagenome / Metatranscriptome360Y
F060554Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0126379_112633081F060554N/AQHVTIHVCVAAGTVDEMKRDRVLGKMSAQEAFRRHLERV*
Ga0126379_112633082F007009GGAGMRARTAYRLAMLADGFQPLLNDCKRSIEKGWPTKIVDEAEVLSWDRSALTSTGMKLDGDLAVIDADVADASLVETLADALGKSFPALFEHGLVRHAGGPKEAWIARVDEPFRRLASRRWYRGSDPDDPAVPKYLVECFGSLGTRQFAVDGPHACNQAGEVIDEYRFAGGASPATTPRATLPVLPKAAYALACNLFDEIARAAGLAAIDGNSRRGEAELRRFELDADTEIETRDHGAMTVA
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