NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136551_1000674

Scaffold Ga0136551_1000674


Overview

Basic Information
Taxon OID3300010388 Open in IMG/M
Scaffold IDGa0136551_1000674 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9353
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (92.59%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000447Metagenome / Metatranscriptome1128Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F002245Metagenome / Metatranscriptome578Y
F002935Metagenome519Y
F005531Metagenome / Metatranscriptome397Y
F017829Metagenome / Metatranscriptome238Y
F019325Metagenome / Metatranscriptome230Y
F020168Metagenome / Metatranscriptome225Y
F050376Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0136551_10006741F019325AGGAGMTQLTETLYSTIVHDFHNGGVKSSYGLDTYTRKAILKALLSSKGCECVNCL*
Ga0136551_100067412F050376AGCAGGMNLDEYKAYVEAQRKASLQKAIATMSEANDKMSSLFGTKEAN*
Ga0136551_100067414F020168GAGMIDVIGSLIAIMLILFLCSPIILAVYMWNAAKVDVDNDGKEDLPNRW*
Ga0136551_100067415F002245AGGMSNLIKVPHTVTFEAIIDLDKVPSSIINQLINLDEQTLVYMCKGATVHALGMSNVLPLANENNTWAELTVKEGN*
Ga0136551_100067419F017829AGGMANRFRVEIYDANKLNDITIYSDQGVDKEYLTELVFSNIRKFSGKINAYVFDNVKKKKTTAMFLDEHTVEFSQNMIRNATKVELGS*
Ga0136551_100067422F002935AGGAMDRRESRTNGYIGTIVDGVKLAEIANGIYNLQYSSDFSKCTVDSLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCLTDRTEDIADYIRIFGDRLDRNCSLWQSKMSVGAGTIAV*
Ga0136551_100067424F000311AGAAGGMYFELTAPSQVAFARATWEAEMIGLDPQTIAPLTFNIGTGSIEKVSRIRDKYNLVESYTSDYEPTGYTGR*
Ga0136551_100067425F001043GGAGMSDYKDGFQDGYKFAREELMEKLAEIDIADIDSWILDRLSEMIEGNQL*
Ga0136551_100067427F001125GGCGGMGDRANFGFKDRKGDTVFLYGHWAGHRMLENLANAVEAARPRWTDETYATRIAISQLVGDEWQSETGWGISINQLADNEHKVPVIDWANATFTLMEEDLQTVVFTSSLDSFVNKYSQLEEPAMV*
Ga0136551_10006743F005531GGAGMTITYSLWQGSQLLSVNNKASKPEEILAVIEELNKLGKGFTFNVREVDTK*
Ga0136551_10006747F000447GAGMGYIEIFRINEEGAGWVDLSEATPAELIDLEIGLFQEGAL*
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