Scaffold Ga0137675

Basic Information
Taxon OID	3300010966 Open in IMG/M
Scaffold ID	Ga0137675_1000004 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	FASTERIS
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

FASTERIS

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	56483
Total Scaffold Genes	91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	74 (81.32%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

56483

Total Scaffold Genes

91 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

74 (81.32%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location Name	Jussy, Geneva, SWITZERLAND
Coordinates	Lat. (^o)	46.25	Long. (^o)	6.28	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Jussy, Geneva, SWITZERLAND

Coordinates

Lat. (^o)

46.25

Long. (^o)

6.28

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016519	Metagenome / Metatranscriptome	246	N
F041756	Metagenome	159	N
F051078	Metagenome / Metatranscriptome	144	N
F078007	Metagenome / Metatranscriptome	117	N
F085678	Metagenome	111	Y
F086725	Metagenome	110	N
F088784	Metagenome / Metatranscriptome	109	Y
F091938	Metagenome / Metatranscriptome	107	N
F105044	Metagenome	100	N
F105161	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137675_100000443	F016519	N/A	LNKAIKLSGMGGWSINMTHCLWQVRNGNGDLTVATSITLKDSMATKRFDKELHDTYDKFGRDVVKSYVSSFWNMEARDNPDRYGIDLHLYKEDLLVGYAEVEVRLSWKTVEFPYEDLNVPARKKKLLTQELPTYFFSVNKDGTALFHCEAAAVLASEIKESRNKYVYQGELFYKVSLDRLTHIVLSTAG*
Ga0137675_100000444	F091938	GGGGG	MIVVEIRQGIGLDIEYNENICHIIDDGGDVDKLFAYSGILIKLPFISIYIGEFDEIGSLINSDKSTGE*
Ga0137675_100000448	F085678	AGGA	MNVEMIDEHEDGSATFTFDLNWEERNILLNLGIITAIKMGIEEGTKYVGNTDMGNTGCGESDSVHGEGEQPREPEQS*
Ga0137675_100000453	F051078	AGGA	MDSSTNLKPNDIALILRPTIVDGEYTKSFQVLVSGFGPLTISQDDADNLVGMAMILAATVQYMQEDEKLADKLVSYCGKVFADVGDFAYNPDHDSFSDGSFTVDTKTVGGMQ*
Ga0137675_100000462	F041756	AGG	MKLHELENLIMAAWITKEDIDSILWVLMDREKKPDEDELANLLIGLHSLHDARMTKLFQAYDTVLKTNKITYKGYDFPKNTSTL*
Ga0137675_100000475	F105161	AGG	MLSDVDIRDFDKQPVTPLFSVKPKSYIQMPNTGVVFYFDHIDGMYSYCLDMFGDTIHLAAWVDVIPLVKKTD*
Ga0137675_100000477	F086725	AGG	MYKIQARLRDKWHCLEFDVTDSGDYKPKRYHTLNDASLALERYLDGLFFANKEQVDFGNFRIVKE*
Ga0137675_100000484	F088784	GGAG	MERIMKAKYKGICCKTGAPINVGDIVVYDTVTKKVWLTVDEDRMVMHVCSR*
Ga0137675_10000049	F078007	AGG	MMATKKAFKPCEECSSPAKCKAAGKCMAKEGKGKAAIAIMIGMPKKMNKGGMAKKGKC*
Ga0137675_100000490	F105044	AGGA	MVLTTPEQINAYRLRVLRQGLKAEMRGMRLTAKGQTCYAILKSMGYKGTKQQVFDAVTIDSENALAEAMAS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137675_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences