Basic Information | |
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Taxon OID | 3300010966 Open in IMG/M |
Scaffold ID | Ga0137675_1000104 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | FASTERIS |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7876 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (83.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland |
Source Dataset Sampling Location | ||||||||
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Location Name | Jussy, Geneva, SWITZERLAND | |||||||
Coordinates | Lat. (o) | 46.25 | Long. (o) | 6.28 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000220 | Metagenome / Metatranscriptome | 1544 | Y |
F006622 | Metagenome | 368 | Y |
F040586 | Metagenome | 161 | N |
F103130 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0137675_100010410 | F040586 | AGG | MMIFKELGGIDWLRKHLDKNAKMPAKYYRLELDAPSKREIND* |
Ga0137675_100010414 | F103130 | AGGA | MKRIDQWKAKLKVAKAELRIRERNANAAIRALMHVRTAITELENKIERHLAKP* |
Ga0137675_10001046 | F006622 | GAG | VWAVNEYQKQFDLFLKIFVRLCVVWWVLGLLKYLPDALADKIVNKLLGMIGL* |
Ga0137675_10001047 | F000220 | AGGA | MSDEKPADILSKVLSYVDSPFKLFALILMAVFAFAGYFVWQNQALLMGAYKESKKMPSIVEDRVEDAAAHLFKTTNATIVAVFKVNPMFGTRVLHRAYTKEGRDKTNDGLDVGLFTQNAANNADVVRLMASEIPCGEYRSAQSEMGLWYIAKGVTYTCRISIPPDPNRFVGQITVGWDNEPADIQVARTMMEIASTMLSRSKQ* |
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