NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139328_101330

Scaffold Ga0139328_101330


Overview

Basic Information
Taxon OID3300010994 Open in IMG/M
Scaffold IDGa0139328_101330 Open in IMG/M
Source Dataset NameECM14MPS05_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1813
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Source Dataset Sampling Location
Location NameLouisiana, Port Sulphur, Bay Sansbois east
CoordinatesLat. (o)29.45083Long. (o)-89.75005Alt. (m)Depth (m)0 to .02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008068Metagenome / Metatranscriptome339Y

Sequences

Protein IDFamilyRBSSequence
Ga0139328_1013301F008068AGGAGMEMDEIIVAGEPCLVIRSPLIPRTLLCNSLLQPLLSRLKGPEEFVAFASEPCIAPRDLDVVLVTAFWPRCVFNQASEEAVSKPLQTIKPQHLMLVERELYMKLSKKSCLFGDFIDSLLLHNEDRRKVSELLSKVRSWIRDNKSYGLFFLTDVRGMEDFVDQTAGIFEIVVKAEVETEQDEPLLRFTIMKHPSIAEIDKKIEVAFEKGQPKRRRG*
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