NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139308_122281

Scaffold Ga0139308_122281


Overview

Basic Information
Taxon OID3300010996 Open in IMG/M
Scaffold IDGa0139308_122281 Open in IMG/M
Source Dataset NameELM11109_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)914
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Source Dataset Sampling Location
Location NameLouisiana, Port Sulphur, Bay Sansbois east
CoordinatesLat. (o)29.4542Long. (o)-89.76993Alt. (m)Depth (m)0 to .02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008812Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0139308_1222813F008812AGGMAAKRGIRSMLQWIGPIVAIIGLLWTGVKDYQKGDIKLPKLPQKQVLTKPVYPIQYCLMAYDPNNDKVWYQHEDGRWYEYAPPQRRYAATPQYNQNQNQATVGTAYGTSTGSVGHYVR*
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