NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010996

3300010996: ELM11109_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp)



Overview

Basic Information
IMG/M Taxon OID3300010996 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121658 | Gp0160591 | Ga0139308
Sample NameELM11109_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp)
Sequencing StatusPermanent Draft
Sequencing CenterMolecular Research LP (MR DNA)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size71183183
Sequencing Scaffolds32
Novel Protein Genes36
Associated Families35

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available10
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella → Methanocella paludicola1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1
All Organisms → cellular organisms → Archaea2
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1
All Organisms → Viruses1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM011

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCwc Coastal Marshes
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → freshwater marsh → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationLouisiana, Port Sulphur, Bay Sansbois east
CoordinatesLat. (o)29.4542Long. (o)-89.76993Alt. (m)N/ADepth (m)0 to .02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F001971Metagenome / Metatranscriptome609Y
F002876Metagenome / Metatranscriptome524Y
F004898Metagenome / Metatranscriptome419Y
F008236Metagenome / Metatranscriptome336Y
F008812Metagenome / Metatranscriptome327Y
F011355Metagenome / Metatranscriptome292N
F012735Metagenome / Metatranscriptome278Y
F018364Metagenome / Metatranscriptome235Y
F019679Metagenome / Metatranscriptome228Y
F021974Metagenome / Metatranscriptome216Y
F025178Metagenome / Metatranscriptome203Y
F025653Metagenome / Metatranscriptome200Y
F030408Metagenome185Y
F032870Metagenome / Metatranscriptome179N
F034849Metagenome / Metatranscriptome173Y
F036104Metagenome / Metatranscriptome170Y
F037495Metagenome168Y
F038920Metagenome / Metatranscriptome165Y
F043481Metagenome / Metatranscriptome156Y
F043981Metagenome155N
F047392Metagenome / Metatranscriptome150Y
F050784Metagenome145Y
F050864Metagenome144Y
F053661Metagenome141Y
F061370Metagenome / Metatranscriptome132Y
F078220Metagenome116Y
F081276Metagenome114N
F087210Metagenome / Metatranscriptome110Y
F088437Metagenome109Y
F094833Metagenome105N
F098566Metagenome103Y
F098703Metagenome103Y
F100587Metagenome102Y
F101032Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0139308_100529Not Available2771Open in IMG/M
Ga0139308_101502All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella → Methanocella paludicola2084Open in IMG/M
Ga0139308_101562All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium2064Open in IMG/M
Ga0139308_102739All Organisms → cellular organisms → Bacteria1758Open in IMG/M
Ga0139308_105726All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1403Open in IMG/M
Ga0139308_109990Not Available1184Open in IMG/M
Ga0139308_110893All Organisms → cellular organisms → Archaea1152Open in IMG/M
Ga0139308_112651All Organisms → Viruses → Predicted Viral1099Open in IMG/M
Ga0139308_115102All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1037Open in IMG/M
Ga0139308_115177All Organisms → cellular organisms → Archaea1036Open in IMG/M
Ga0139308_116424All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1010Open in IMG/M
Ga0139308_121086All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium930Open in IMG/M
Ga0139308_122217All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium914Open in IMG/M
Ga0139308_122281All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium914Open in IMG/M
Ga0139308_122990Not Available904Open in IMG/M
Ga0139308_124910Not Available881Open in IMG/M
Ga0139308_126202All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi867Open in IMG/M
Ga0139308_126214Not Available867Open in IMG/M
Ga0139308_131765All Organisms → cellular organisms → Bacteria815Open in IMG/M
Ga0139308_133572All Organisms → Viruses800Open in IMG/M
Ga0139308_138887All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon765Open in IMG/M
Ga0139308_140121All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage758Open in IMG/M
Ga0139308_142643Not Available744Open in IMG/M
Ga0139308_143588All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium739Open in IMG/M
Ga0139308_153443Not Available695Open in IMG/M
Ga0139308_154529All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon691Open in IMG/M
Ga0139308_155331All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae688Open in IMG/M
Ga0139308_157671All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01680Open in IMG/M
Ga0139308_159894All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon672Open in IMG/M
Ga0139308_172625Not Available635Open in IMG/M
Ga0139308_175143Not Available628Open in IMG/M
Ga0139308_176013Not Available626Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0139308_100529Ga0139308_10052910F025178MNIKNTTIELDEYQKHWIHTRPYGHDIVIWSEPNKKITIKCKWPDKVRSKDGRVYDSRR*
Ga0139308_100529Ga0139308_1005294F011355MKSLVVIVVLLAGPDNLEKNYYPVDTEDNCAVVGQRIIEQIAKYKDNIGEQQGWYTLDDKLIVGHYCTVK*
Ga0139308_100529Ga0139308_1005299F032870MSHRDAEELAAEIAYMQDDPSFHPRYNPKGKKDTDDLEARIERLEFRNEKLHKFNSKLIDEVRKLRRQLKIVVDQYRNKGAL*
Ga0139308_101502Ga0139308_1015023F025653MSDPVKYFETKLKAMSLAELQAYKKRLDESIKQKISTNKPNEQIAPLILYRGILEHEIKTRTNQR*
Ga0139308_101562Ga0139308_1015621F094833MTKEEKILNDGLEKVPEKKDNMDWRSSLAFFNSIGCSPFWAKVKLALSLAYYRITAFLIPISKSARLQLMT*
Ga0139308_102739Ga0139308_1027393F034849MFPLILASIFTATPLGPGKVPYFMRQCDRIRIYDKSNDTHWILCINGVYQYPKNGKPQDRSLPQHKQSII*
Ga0139308_105726Ga0139308_1057262F050784MKELWTGPEFTRRNRGRMGIMGSIATLLGVAFAIVGIISEASLTLLGLYPTSWYLLAIASLIFSLGCWLGWAVGIYLHAKETESKE*
Ga0139308_109990Ga0139308_1099904F025653MSDPIKYFETKLKEMSLNELHAYKKRLDESIQQKIMKTAPNEQISPLILYRGILE
Ga0139308_110893Ga0139308_1108931F038920LLTEILTDEQLINLYTTPGYLVAVDYPKKEVTLHTVDCMLADPISSVGVKPSKVRENKTGEFWFSESRDEANSKAEEIAKNNGYTYTICPICDR*
Ga0139308_112651Ga0139308_1126512F101032MTDYITISFGPSEDVARFGWWNRKERFYDLEEAKQNGRQQLSNPGTFGYVVIEEGEDFWEVVDELGAAGASIEAKRFTYNVSPVPQLILV*
Ga0139308_112651Ga0139308_1126515F021974MSTNIVSEIYSYHTDWKEGKVNQMWIEQFGDEYKGYSYVAVAHNPRNGKTMEMSKPRTSYQETLKWVRGWCGTSCT
Ga0139308_113763Ga0139308_1137632F087210MRFLIGALALAGAEAALAHTPDTGFLSNFGHQLTSLHHSPAAMLLGVLVLALLLVAIRGLKAR*
Ga0139308_115102Ga0139308_1151021F000325MKVANGNDKLGKGCIVVSRPVGDTCPSDCDYLNNGCYAEQTEKQYKNARNAGFANIVTEKHKIRAMILDAKKRKKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDSLPDMWFYTHIYDDRLVSLEKYMNVYASVHDDNDMGEAMAQGFKLFAWCDSDMKIAPKRPKSKVKAQAWRKSLPKLVVLNGTRFVTCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH*
Ga0139308_115177Ga0139308_1151772F098703MIKKAHIVINLLPEASKASTIQIEERIRNEAKIPWCNQIEEVSIEDTEASYMKLKKHGVSSNVARNLVDLYTE*
Ga0139308_116424Ga0139308_1164242F036104MNQEGIPLSIGIIVAASVLGAAFIAGMVLLAVLFA*
Ga0139308_121086Ga0139308_1210861F047392LIASLGFAASAGQVAAVEANGSGQPANQIGLVHDHEPVKYAGYVLYFVEGKLAGHDQLTQTWSIVPREEAEFEHAFKIETHAIHSDADAAQPSFNMRNSWKEGYENSVRYELFHQDEDRGLVLDAIQGPDGKPQEIDHETEHYIFPGSLKIGTKWLSEPVTSSLPGTCELEVIGSEIYNGTNCWVVSSTRQPKKDPLMKNSETMRKTARFLFDPLTLSVLRIDAVTEGVGPLGRAFKFVYHMEVAE*
Ga0139308_122217Ga0139308_1222172F008236SKYMNVYASIHNADDYKSAKSAGFELFAWCDSDMKIAPKRPRSKAKADAWRQALPKLVVLEGEKYVTCPEIRRGRGVVTCTPTKGSVSCDLCVRGLANVLFPSH*
Ga0139308_122281Ga0139308_1222813F008812MAAKRGIRSMLQWIGPIVAIIGLLWTGVKDYQKGDIKLPKLPQKQVLTKPVYPIQYCLMAYDPNNDKVWYQHEDGRWYEYAPPQRRYAATPQYNQNQNQATVGTAYGTSTGSVGHYVR*
Ga0139308_122990Ga0139308_1229901F037495MNNTDDSASDEDQLASVPMDYSALLAMTRPLVITEYALRSLRGEEVFRLGSGSSPGPADRRAEFALRIGEILCPGGECDAAWESIFASGKTGSNLKLRIHLGMS*
Ga0139308_124910Ga0139308_1249101F081276MKTIEQLTRECDNLASRYYRLDSGSRERAARDWLKQVKKTAKMINNRFKKPIMNEKKGKFSQSF*
Ga0139308_126202Ga0139308_1262021F088437CVGESGSGCHFSYIVVGLGTMAWTTIACPIELALGVEPPTHIIEDEKHMKECSEKVYVPIVYAPKEALIWWIDYIDSVSEGALLSSLERFKAISERLAHIVGANVDGWDPAQQALQKAFPGITLTECHLHAMIKFGQHLATFKRQRKAMGQSVSEQEEAQIRAAFARVLQAPTPAAYQKALNDLPNVFDNEPLVSRKDSLVTKQALFQAWTTDAKLAVVSTPLDQCMKFLNRKQDNMQTLHGPKSGLATVNAWAITRNCWRFLKGALRAGLSPLELAGANFLGIPWMQL
Ga0139308_126214Ga0139308_1262142F004898MNSVELSELIEEFREIDLYETNPQDWMGYLESDDYWVPDSELAY*
Ga0139308_131765Ga0139308_1317652F098566MTRNHFDLGLTEEDRRALREARLRPFEVDREVALRLIAEWGPLVDAAVRRRPLLRGAPFTLPGHEEGTGS*
Ga0139308_133572Ga0139308_1335723F001971LTYEEFIHKGTEFYMEMVRLVDTKLKYRMEFTEQETEIKDHIMEFQHQVKLNELRDKFEKCLDIDKT*
Ga0139308_138887Ga0139308_1388872F078220MFEAVVDVVHGKKREKLMFAKCPKCGRLNSFRPKSKGMQLTAMRCSKCGTIICFGVRGMNSHFSELAEIFCENCEDDCRKCPINKLVNEQTFSRKRYIK*
Ga0139308_140121Ga0139308_1401212F012735MRKSNKQLETTIRILHEEWALNQGLRHKHQAASIKRQAASLKHVPRYVASDYKATSIK
Ga0139308_142643Ga0139308_1426432F061370MKYTEDYGKMTDEQLVQTYNAVMANAYPGDESAIETEMEKRGIDLEYMDQPEQWG*
Ga0139308_143588Ga0139308_1435881F019679VLTANPVLPVFLIVGGVFGALAAVSAYLISYHEYRQRMLRPDQKPRRMALQTAVVTFVVFLAGSLLLSIL
Ga0139308_153443Ga0139308_1534431F050864MKQNTFTVNSKRIRPALRKGKTFLCSGILILLALALFSGCSLSEKTSAEPVMPEPLEFTYSVSVSAVPIQISSGNLHWHKELPNNSYTLEDIALEIYNFGDFDIPVAQLEITVDEDVSLFNIKQIIAGGTKENIALQPMMEGYDGGIHRVYVALLDNNGGVL
Ga0139308_154529Ga0139308_1545291F053661VGKVVDMKDYYQTNKGRLLGIGGILIIVGLVLYFARGHEVVLVLPIVGMVLFIAGVIYKPRKKKTENVASEAQ*
Ga0139308_155331Ga0139308_1553312F002876MACKKSELISAINSFGAARATGDGNLVGFSANLIGQLIDTLEFAPEEPEEPNKETAE*
Ga0139308_157671Ga0139308_1576713F018364VQAICHIMCKEESEGTSHRGLMDALGIYPAGFWIDNLMDTHNALWSYYHDQKREQELKDDLDSLDEFIK*
Ga0139308_159894Ga0139308_1598941F043481MSIDIKLERGVKGHNIVRKKCPNCGAEFVFKIHKNAVHDVGGDALYYPEENVVRCKVCMSTFKYEYKPKG*
Ga0139308_172625Ga0139308_1726251F043981MKKETTVEKTKAMLVQEVEQKFRLSKGTLDSLERANKETIVKLLAL*
Ga0139308_175143Ga0139308_1751433F030408LTMSIRIALITDRTGRYAHVWGEPITWNAFVDQLEDAGCEVIEEQTDDWEGSTREEIMEDCVSVHQLLTDTDFVPH*
Ga0139308_176013Ga0139308_1760131F100587YYCGELQALLGNDSAARDHWRRAAAGRDFRQAAFAYRAAQRLGEASDAEWRPRLQAALDEADTYLFRGGHYPALATCSRGMLLLALGRVTEGDEALRQVFVLPDKGMPHHIARLALEER*
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