NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139299_1164989

Scaffold Ga0139299_1164989


Overview

Basic Information
Taxon OID3300011007 Open in IMG/M
Scaffold IDGa0139299_1164989 Open in IMG/M
Source Dataset NameBasal ice microbial communities from Matanuska glacier, Alaska, USA - MataB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterTsinghua University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2175
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacier → Basal Ice → Basal Ice Microbial Communities From Matanuska Glacier, Alaska, Usa - Matab

Source Dataset Sampling Location
Location NameMatanuska glacier, Alaska, USA
CoordinatesLat. (o)61.6558Long. (o)147.5811Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025775Metagenome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0139299_11649891F025775GGAGMKQFMTFQGFPMVVVTLMIIWAWISILSVLIGSFF*

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