NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10336

Scaffold Ga0151515_10336


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10336 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)21187
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (29.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064499Metagenome128Y
F065526Metagenome127N
F073261Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0151515_103361F065526GAGMDEKDFVEVMPGEKKPKDPRMERMDAQFLPSLPATILVLGQCGSGKSSALWSMMTKGYVTGKTKKKSIFDEALIYIGTMDAKTSFEKMPIENKLIMTEFEPVSFDEYQTDLKKHQLERLEKGKPMMNTAIIFDDFAGASLMRKAKVGGAPPIEKLCLTSRHEANTTLFYLTQFYKNTGFTSPAVRANL
Ga0151515_1033619F073261N/AMEAVLNNPQTSFLTNPRTFNEIQKQSGMSMSAMMKHIGRQSKKQKEKGPTDAEKSEMRLKEMEAANKK*
Ga0151515_1033623F064499N/AMTEAHIINLADRTDRWEQMKEAWKDQPITLVRRDAIKINGTDIPDAYHAVFLKHREMLTTAKKLGEKHILIMEDDAVPCAEFGRHWTAIKEYLDARDDWELFNGGMLMIRDCVDKIVRIDHKDKKDPTMLLGVWRGAMAHFLYMRVDACLEKMAEWEADGKPMFDGWYSHKLKTIASIPYLAYQRDGYSDAAGQVRSWEERFKYEEDTMKFALREFMEPQKEKPDFDHADPRQTVLREIDRTSGGFEPPKGPIWDGHGYS*
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