NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151514_10184

Scaffold Ga0151514_10184


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_10184 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)30769
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (87.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003862Metagenome / Metatranscriptome464Y
F004721Metagenome / Metatranscriptome426Y
F005587Metagenome / Metatranscriptome395Y
F032951Metagenome / Metatranscriptome178N
F038155Metagenome166Y
F103146Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0151514_1018410F038155GAGMNTNRPNGKAYKKRPKVQKQTGKTIGGYSPTKLAIRAQKRAKA*
Ga0151514_101842F103146N/AMSEPRYLEGDEAALNTEPESDDDDSGLPDRMWEDDE*
Ga0151514_1018424F003862AGGAGVATYLFRTPTLEQGPIGGHRLHQHFKQRTKSYTVINESGTYSLTQYPLDSDLADYTAYYIGGGEHTGISEAIRTAMIAASIGITSANFTVE*
Ga0151514_1018427F032951AGAAGMSSGQFVRSDRFNKTIMRDGLILTLRKDGTVKVQRDPKTGDIIKGQK*
Ga0151514_1018431F004721AGGAGMAGTAGSSLTAELNRLASTTGKAAQGAANTYAGTSGLGLIAALNIKASGVRQPSAYKGLNAICNELAGTTGKSASDALRTI*
Ga0151514_1018438F005587AGGMSYLAKAIFELKPNAEFSFTDNDYSTIKWDSLEGKAPTQAEINVAIEQIKAEEITAEAAKVTAKTALLTQLGITAEQAKLLLS*
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