NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151514_10263

Scaffold Ga0151514_10263


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_10263 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)25469
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (34.78%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F001338Metagenome / Metatranscriptome719Y
F001725Metagenome / Metatranscriptome645Y
F002038Metagenome / Metatranscriptome600Y
F002413Metagenome / Metatranscriptome561Y
F003714Metagenome / Metatranscriptome472Y
F004790Metagenome / Metatranscriptome423Y
F006659Metagenome / Metatranscriptome367Y
F010765Metagenome / Metatranscriptome299Y
F015597Metagenome253Y
F017613Metagenome / Metatranscriptome239Y
F019449Metagenome / Metatranscriptome229Y
F021107Metagenome / Metatranscriptome220Y
F029754Metagenome / Metatranscriptome187N
F042864Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0151514_1026310F001055N/AMGTKSIRHIVESTVATYLAAQTDLTTIAFLTGDSAATQTLPKAIVLCESAKAPGDLPEGLGNYSCSVRVTLFSNADDTTLADHRLRCAALAGNMRDLTSIKAAFTTGADASCYDVTIGSEDEGVDERSWATSFSYDILVVLPPA*
Ga0151514_1026311F001725N/AMAAINNGTTCLYGVAGTVTNLYVQSYSLSSSFNAEATVVDESGLTKTHRLDDRKSEITIEGICKTSTMPTLGAALSFTLNAATAYPSGTASVSFAGTITKIDEKGSNKGFTAVTVTAIDYEGITPA*
Ga0151514_1026317F029754N/AMSCNTVTFKRGTSFSASVVWNPEVGGLANLIGVTVTSTIIDSAQNEYDLVCTVAGNGLSLTAVYSGDTGAWAVGSAKWDIKFSNNGSIFFSDTMRLDVIGQVTV*
Ga0151514_1026320F021107N/AMIAYLLCIAVGFAGGFVAGLKNASSAKVEKAKSILDVLKGR*
Ga0151514_1026323F019449N/AVTVDIFTTVCVPGIASLAYFSAGVANLCTRNWPMAVMWFCYSIANIALLSTVLRK*
Ga0151514_1026324F010765N/AMSPVQPPQPDDLPVSLRDVSVGILIGSTAWLVRYACSLEKHSLGYIFRRTATAGLTSLLVGMATKGYFSSEGMAFAAAGCAGYASPELVDLLLARIKAMKGKTPAKE*
Ga0151514_1026326F042864N/AMSTPTKPKATLVSDKAMVELLKRKVANFRESASLKDKDGYVRGIGSYALYGVDHTRGQLVVLASEPTAGDFNKYVTAKAKADVCALFDQVVEYRDAGSHSNPKVTILCWHLA*
Ga0151514_1026327F003714N/AMPNAHHPYTDTVTFAGRPIPLKRPMAVFAAKRLEAILPQIAALNAAHKSQADAAAALDTTVCTLRTWLELTGTTWINLKRRGKYNRQK*
Ga0151514_1026329F000957GGAGGMSQFKHLDGMVALLSEIYEINERVMTGDICSAKAAIASGRMKKLLNHYHEALHEDGATKVSLQAYVAAGGWVGITYSYDIDGFEVAGSQVPRRV*
Ga0151514_1026333F006659N/AMKKDSLKPSAEYRIIADSSYIILPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATIKAGEVTKAEPSAK*
Ga0151514_1026336F015597AGGAGGVSDPKPFDPFDPVGAAMAAMHQANLLAAKDARILQLEERLERLREAGDDIWYCVRHAQTVNPQELIEAIANWQEARNDG*
Ga0151514_1026338F002038AGGAMSTPVPAGIERIARTVQGQYALLLLLDGYPYVEFTARKHADFLSDLGLWKRKTHPSLVRSQVRFFTVDPVGTLKELTFK*
Ga0151514_1026342F001338N/AMEPTNDRPPLTSISTNGTYRLKLIRPKPEKVKVWDDGFVSSRLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKFTEEIRPDATSAEFLQYLAPACGQTILVGVEVEANGEYNGKPQYKYKLTYPKGSQKPTVQDNPPASGVDF*
Ga0151514_1026343F002413GGAMADAPTPMAAPTLVLIAGFARAGKTTLASGLLEWSTRPAENINFADALKEAANHYMDYLGLDGNFFREDFKCDNRDFLVNAGTFARRLDKDVFARHFANWCPVMKHHDQPSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGVGPANDEELESIAEIRASHLFDQEYIFKPNARNQIMSEGRILAKSWRL*
Ga0151514_1026344F004790N/AMETLTRETIQWGQRIGISADRLAFLASCPKFTVCHGNRKSERNVKDNPNHHLQRLGDCWWFRLRRRGNDIVENIGRDLETARKRRDEMLAAFDAGKPVPYLSNK*
Ga0151514_102637F017613N/AMANSISAAPAVLSAGVLSTLKNKLPVLSGISTVFSARPGSTGMAIQVPLIGVSTATAFSTGGYLTQDDATITSSTVSLTQYKITSRFTPSNLKDYGADFFVNNFVQTASIGLAQKVMDVINAQVTNANYSVSSTSGADLSYAELVAAQKTLDDAKAPSPRYAVLNSTYISDLRKDTTIVGNNVLGARIVADGDLGVIAGARIYQFANLSANAENLAGWVAGPDAIAFASALPDSMDIPGFEVSNAVDQDTGLGVQVLVGMEQSGYLNVTATLMFGAAVGRATSLVRLKTA*
Ga0151514_102638F001298N/AMSLYGDELLNDAKEMVGDFGVAGSCNSGAITFSCLISDPAVQTVLEAGGYCERTQYSVRLPAVTASWSQPDGSIGASAALLSGGAPIASLAQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ*
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