NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151672_100660

Scaffold Ga0151672_100660


Overview

Basic Information
Taxon OID3300011129 Open in IMG/M
Scaffold IDGa0151672_100660 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32257
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (8.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.36555Long. (o)137.72861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006896Metagenome / Metatranscriptome362Y
F010473Metagenome / Metatranscriptome303Y
F023607Metagenome / Metatranscriptome209Y
F093884Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0151672_10066025F010473N/AMELLRYEIKAGFFKGILFGIRHYPFEDKEIYEEDIVIYFGIFQLVITKIYRK*
Ga0151672_10066031F093884N/AMKVNEALWDKVRKSIEYRTEQDQAITDITINFRIKEKSDLRNYLQINLSQYERK*
Ga0151672_10066053F023607N/AMHIYKLVFDTEQQGKQVLIDNNVWEEITIEGVTSMRYINGTKGVVNIGKVIDPAKTTDPEHPVYYDGWAYDVMSTDELDFGSNEVYPADNSAHQFYGYPRNAEVPKP*
Ga0151672_10066055F006896N/AMANEIYSTSWWGSPMEIGWGSIYYRFAFPSAIPALLVTLESRASYYENVTCTTATLTELENIE*
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