NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137472_102663

Scaffold Ga0137472_102663


Overview

Basic Information
Taxon OID3300011198 Open in IMG/M
Scaffold IDGa0137472_102663 Open in IMG/M
Source Dataset NameArctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 7 - S13.1.40.a - transect 1, age 29 years, surface depth)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)996
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameNorway: Midre Lovenbreen, Svalbard
CoordinatesLat. (o)79.1525Long. (o)12.21555556Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014483Metagenome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0137472_1026632F014483AGGGGGMKASSVKSFSKKLSCPSSSLLLSFRIQVLAPEINFLVRHHLAGCDFCYCELSLLALYAAPLKGECRTPDLPINLRILAESILGHVKSEKVVGENS

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