NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137392_10504100

Scaffold Ga0137392_10504100


Overview

Basic Information
Taxon OID3300011269 Open in IMG/M
Scaffold IDGa0137392_10504100 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1005
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027975Metagenome / Metatranscriptome193Y
F052099Metagenome / Metatranscriptome143Y
F075880Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0137392_105041001F052099GAGGMPSVAPAARVAFVVEAISGLQRLQREMARLSQGDENYESKKRALQTAIQELRKMISAKA*
Ga0137392_105041002F075880GAGVYNVELARLICRDINNAKDDPQKEQELISLLRAVIKEDQEEMRIRMAFLAKKYAAVISDAKAAD*
Ga0137392_105041003F027975N/ARSQLPPAAAEIIEHCVIVKQENANTVTCSCLPATTFIDSKTGHTKLVCKKMKEDK*
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