NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138368_1107052

Scaffold Ga0138368_1107052


Overview

Basic Information
Taxon OID3300011309 Open in IMG/M
Scaffold IDGa0138368_1107052 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 Surf_A metaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-28.2362Long. (o)-38.4949Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023529Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0138368_11070521F023529GAGMKQAAYVTRDEPDRVWFVDTKQGSAQPSYYAVAHADMTHPSAVTAGDTIYVGEQRCDVVSSDADSTAGLKGEGSAVETYHSSSVVCAQALSENAHSTSDAIVTHDPIEVLFEGATQSCTSTDRPALRFIHDLATTDSSNLCADATACATVLEYNGQNRLVRWANGDTIADVSTHELMDNNDIAVNDRVSIRTMNSHTYETRTVDYINLQGLGASTDNFFTVSQPFTAAHAEKRIFLNFKGTTSSAACSGRGLCDGSSAECQCFKGYTG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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