Basic Information | |
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Taxon OID | 3300011335 Open in IMG/M |
Scaffold ID | Ga0153698_1835 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 11306 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (21.05%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Hwacheon, Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 38.0874861 | Long. (o) | 127.761456 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035216 | Metagenome | 172 | Y |
F055532 | Metagenome / Metatranscriptome | 138 | N |
F068742 | Metagenome / Metatranscriptome | 124 | N |
F094923 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153698_183517 | F055532 | N/A | MTQPDLFGALPPPPRKLTNLDLAKIAFTEFREALRSSIHQHPSDPRQLIQLEDDVQFALTSRFGHGPKNPGQLAALCIRGVDVFMNHHWEDGTPGTNGICRRCKRISK* |
Ga0153698_18353 | F035216 | N/A | MITYIILSSIICTGAFAIGLGQRRERRRLGTMVQGAHIPHRLEQPISEIASLRMELSLRTLQLESERLESDRLRSIIRSTIR* |
Ga0153698_18354 | F094923 | N/A | MNNHDPDLVARANRTMSAIRTMVRIILTTAILGLLWLLWRLCA* |
Ga0153698_18355 | F068742 | GAG | MSNISISIDLKLIDQKKLKRMTRQNGQEAAFLDLIMIPTPGSQYGEWMIKQRSTKEEVEAKVQTPILGNGKTAVKWEGQ* |
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