NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153700_10151

Scaffold Ga0153700_10151


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_10151 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)34525
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (87.80%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041638Metagenome159N
F042221Metagenome158Y
F051781Metagenome143Y
F056421Metagenome137Y
F057202Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0153700_1015117F042221GGAGGMTPEDEEFERIMHEQKYKLDSTRTAMVAQDYYWIPIDQDTPTNVKILLLGRSGVATMGHYEHLPGTQFWTHWAPLPRKKT*
Ga0153700_101513F057202GGCGGMNLTQQFKRLTRRLTPAEMAAAELAEAELHRLEAHSAVEYASSVVSYEDARIKRLRKFLADAEKQT*
Ga0153700_1015139F041638AGGCGGMAQKNVVAPRLPSPPQEYDPVYMNQLLSLLRLYFNQLDNAGPMAGSTQTNGTDVVSGLSFFPTSGTSPSLPTDADFASLRIGDVYRDTTTGATSTSQALRIKTAI*
Ga0153700_101515F051781AGGAGMSILEEIKVNRAPTHMVRPAALELQKKTKVIMGEYVERDKLPGEVKQAENDLWQRPVYRSGDGDSMRQVPRVGSLDAFSLPSRGNRT*
Ga0153700_101519F056421AGGAGMKDDEVENLFAYGWLDTAVAIALALLAIAALFFMAGYLT*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.