Scaffold Ga0137436_1000062

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137436_1000062

Scaffold Ga0137436_1000062

Overview

Basic Information
Taxon OID	3300011423 Open in IMG/M
Scaffold ID	Ga0137436_1000062 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	36364
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (72.31%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9778	Long. (^o)	-107.003	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043488	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137436_100006235	F043488	AGAAGG	MAVVQAGKQFTAEDIHQSAGALATKLRDAVSQGGEFRVQLESWPDADLIVMGLSQDEINAIKGFFVGDLPAIAGLLQASTWIKQLLGTGVGVV*

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