Scaffold Ga0119804

Basic Information
Taxon OID	3300011914 Open in IMG/M
Scaffold ID	Ga0119804_100002 Open in IMG/M
Source Dataset Name	Human oral microbial communities from Los Angeles, CA, USA - S14-04-R
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, Los Angeles
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011914 Open in IMG/M

Scaffold ID

Ga0119804_100002 Open in IMG/M

Source Dataset Name

Human oral microbial communities from Los Angeles, CA, USA - S14-04-R

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of California, Los Angeles

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	229166
Total Scaffold Genes	239 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (12.13%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

229166

Total Scaffold Genes

239 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (12.13%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: Los Angeles
Coordinates	Lat. (^o)	34.0722	Long. (^o)	-118.4441	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Los Angeles

Coordinates

Lat. (^o)

34.0722

Long. (^o)

-118.4441

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F051212	Metagenome	144	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F089056	Metagenome	109	N
F097525	Metagenome	104	N
F101359	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0119804_100002100	F040685	AGGA	MKKLLFKLFFTLAFASISLHGQEKIQQVEFSSFGGRAVYSERYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKKLREGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE*
Ga0119804_100002101	F040685	N/A	MKKLLFKLFFALVFASISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQAVDGQDEVIIIKTDKKTYRKMNAYGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0119804_100002103	F051212	N/A	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKDVYLVITKDSIIYRLTEGVTDKKNIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQNNKTWDYITKQVIDIKYSQLDNHLNLEK*
Ga0119804_100002115	F101359	N/A	MKKFLSKRSILVSALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYKGQNFTDSYKETVK*
Ga0119804_10000216	F097525	AGGA	MQQKKIMFKIQNAYQKIIFSIHGHRDRKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLSLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYDEEPYQLTFSLDDKTLAMIIKELGKAVASFKKG*
Ga0119804_100002166	F089056	N/A	MNVFCKIILPILCIISCSKRKEADNTMVLEKNNTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0119804_100002209	F059076	N/A	MTNKILLLGLLLGGVSINAQVQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVKSAMDADLGGNTANSTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMLRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE*
Ga0119804_10000238	F061925	AGGA	MSWEYSINLDSEESASSVVTDLKICELFYSSTMDYIDWKNPESIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTNEEVTLEHIFRSVI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119804_100002

Overview

Ecosystem & Geography

Associated Families

Sequences