NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119777_1001823

Scaffold Ga0119777_1001823


Overview

Basic Information
Taxon OID3300011980 Open in IMG/M
Scaffold IDGa0119777_1001823 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Los Angeles, CA, USA - S01-01-D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Los Angeles
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10746
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076191Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0119777_100182312F076191AGGAMKIIAESPAEIALMWRIKALSDELVNQDNQCTNMPVWTILDNNKAGKDYGAAMYFTSKAAEQHIEENDHHYDNPTTCIRSAHNNQELKDVIHLLILAGGNEIPSNHYGILRDA*
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