Basic Information | |
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Taxon OID | 3300012012 Open in IMG/M |
Scaffold ID | Ga0153799_1000614 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11382 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (7.69%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Ontario, Canada | |||||||
Coordinates | Lat. (o) | 42.581667 | Long. (o) | -79.9225 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010462 | Metagenome / Metatranscriptome | 303 | Y |
F022861 | Metagenome / Metatranscriptome | 212 | Y |
F030735 | Metagenome / Metatranscriptome | 184 | Y |
F042298 | Metagenome / Metatranscriptome | 158 | Y |
F096923 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153799_100061411 | F096923 | N/A | MKTIAIVVLWFVFIGVLATFVSCGSTHQCDAYGQTKQVETKTVSK* |
Ga0153799_100061413 | F030735 | GGA | MKIVFLWYLMTGTVKYQQTMDGHKQYALFFKDGKVVDYAYKAEILEYIKSRTFEYDETLELKK* |
Ga0153799_100061416 | F010462 | N/A | MLYQLPNGKVVHLSIEEYLELTDLDIQFLMSIDYGEHIIDPFTGSAVEKNTREKYIDTDFLPLEDYDLNDMPSDDLPFDDIIDLEDPLEN* |
Ga0153799_100061422 | F022861 | AGTAG | MRAICIDASNKPSKVPESEWVIEGEVYTITRVVRMGLQDNKFGVLLKEVKLSAKSFPYELYDAERFLPIDLLSQVLEETKETVKEADLELI* |
Ga0153799_100061424 | F042298 | N/A | MGRMKEAYIQIMNNNNGIPEDMTLADFLKMKELNIYNWQEYERAKERARLQSNQQKDLGEASEDSEGESIRRKENN* |
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